Ok, at the end of Matrix:Reloaded, when Neo went into 'some sort of a coma' he somehow 'jacked in' to what appears to be a train stop like the one he and agent smith fought in. It is a state of Matrix Limbo. In the train station, he meets a crazy eyed guy (who is in the trailer) who is supposedly controlled by the Meroviginian(spelling?). there he meets up with the Oracle, and the parents of the 'special kid' mentioned in the game. He has a vision of three lines in a black desert, and the Oracle goes and visits Trinity and Morpheus. She tells them whats up with Neo, and they threaten Merv to let his mind o or something (Are you willing to die for this man-from the trailer) Niobe gives Trin and Morph the Logos after the Hammer powers it back up, they rush to zion to try and help by setting off emps and stuff. Bane (the guy infused with Agent Smith) wakes up and and kills the nurse and runs rampant on the Logos. Neo wakes up justin time to get in a fight with Bane, and kills him, after getting blinded with an electrical conduit. Neo still has his second sight thing where he sees and feels the machines. The Hammer tries to go to Zion, but the machines see and hear them and give chase. Zion is getting whooped on as the Hammer approaches, and the Kid who was saved by Neo in the Animatrix mans a walker thing and shoots the gate open for the Hammer to come in and attempt to emp everything, but they are badly damaged and crash. the Logos, with trin and Neo is flying over the fetus fields and power plants, following three power lines, remember the vision Neo had. In Zion, they try tpo restore power while evacuating to the deeper bowels of the city, and the temple place from Reloaded. The Logos crashes into the machine city after fighting whole bunches of sentinels and stuff. Trinity dies from the crash, and Neo goes on to confront a huge, god-like machine. He makes a deal to defeat Agent Smith, who has taken over every human being in the Matrix, including the Oracle, Seraph, the special kid, his parents, and has also altered it to his liking. The god-like machine stops the sentinels from destroying Zion at the last moment, waiting for Neo to kill Smith. The Machines jack Neo in and after a huge fight, Neo is defeated, or feigns defeat and is taken over by Smith, but the new clone goes crazy and every single one of his clones blows up. This results in Neo dying, and the machines and humans make a truce, with The Matrix still going. Morpheus lives, so does Niobe and the kid who was saved by Neo.
Pretty mind-blowing, huh? Well, I guess after that, we have th stupid rip-off Matrix 4 to look forward to, huh? My guess for the sctual ending, like, the scene before the credits will be a glimpse of someone, and a voice saying something about how he/she is The One.
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